Um, no it doesn’t. Indonesians are not free to worship as they please.
My wife and kids worship at the beautiful new Catholic church ~400 metres from our house. My nieces do the same at a Protestant church a short distance in the opposite direction. My son-in-law and his parents do their Buddha thing in a nearby temple. There is a synagogue in Surabaya to cater to the handful of Jews there.
They are all Indonesians, and seem to be doing as they please.