But argument by ten year old article backs your claim that phylogeny is in trouble?
In 1998 your source came out. A source that you claim shows that mammalian phylogeny is in trouble.
Between 1998 and 2008 many thousands of articles on mammalian phylogeny have been published.
Obviously the science of phylogeny is doing just fine, in fact due to genomic analysis, it has NEVER been better.
No, but it is a good counter to your argument "all phylogenetic data shows that..."