Well yeah, since the clause wasn't really used by the federal government until the 1900's, as your link emphasizes. It's illogical to assume that since the commerce clause wasn't used in the past to prohibit commerce among the several states, that meant the power to do so wasn't there.
I would like to see something that says the Commerce Clause was limited to ensuring a free trade zone between the states.
Read again. The federal government attempted to use the clause in intrastate matters before the 1900s, only to be told that was not a power granted to it.
It's illogical to assume that since the commerce clause wasn't used in the past to prohibit commerce among the several states, that meant the power to do so wasn't there.
We're talking about commerce, and even non-commerce, within states that the federal government regulates and prohibits using a power clearly stated to apply to commerce among states.