This project is unfortunatley fraught with technical difficulties due to the fact that there are no neanderthals around to provide sample.
Any estimates as to what the genetic differences will be?
One would expect between Chimp/Ape and man, closer (very close) to man in terms of sequence homologies.
But they will never get to the level for any sort of reliable large number of seqences to provide much info at all.
Yeah, that's my thought. But good luck to 'em.