Most Indonesian Muslims are moderates, but there has been an increasingly active militant minority in recent years.
Ordinarily, when most of a group is considered moderate, that is a good thing. However, that just doesn't seem to apply with Muslims. Instead, moderate Muslims seem to be either quietly supportive of the radical militants or too scared to publicly denounce the extremists.
As Bush once said, and once believed, either you are with us and against the terrorism, or you are against us.
The only "moderate" Muslims are those who have run out of bullets and sharp knives. The rest are all sympathizers or collaborators.