Neg.
In fact if someone does not have feet you do not need a waiver to excuse their lack of shoes. I've been coaching for way too long (and been a reasonable person for way to long) to know this is the case.
A handicapped player would have to do something really egredious like drive a huge electric wheelchair onto the field before any reasonable official would say something.
I mean telling a blind person with a seeing eye dog "NO DOGS ALLOWED" is less offensive than what this guy did. He basically punished a kid for not having all the right body parts to host all the right pads.
>>does not have feet you do not need a waiver to excuse their lack of shoes<<
If you READ the Federation football rule book, you will find, under REQUIRED equipment, shoes. The rule doesn't anticipate this situation, obviously, but its the same question I asked the other coach: what rules do you follow, and what do you ignore? Further, are YOU willing to indemnify the officials if they don't follow a particular rule that you don't think should be followed in a narrow case, and they get sued?
Everyone has this supposed holier than thou BS common sense until its their BUTT on the line.