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That the theory of evolution is atheism:
"First, it shocks the common sense of unsophisticated men to be told that the whale and the humming-bird, man and the mosquito, are derived from the same source. Not that the whale was derived out of the hummingbird, or man out of the mosquito, but that both are derived by a slow process of variations continued through countless millions of years. Such is the theory with its scientific feathers plucked off...

A second remark is the theory (evolution) in question cannot be true, because it is founded on the assumption of an impossibility. It assumes that matter does the work of mind. This is an impossibility and an absurdity in the judgment of all men except materialists; and materialists are, ever have been, and ever must be, a mere handful among men, whether educated or uneducated...

Thirdly, the system is thoroughly atheistic, and therefore cannot possibly stand. God has revealed His existence and His government of the world so clearly and so authoritatively, that any philosophical or scientific speculations inconsistent with those truths are like cobwebs in the track of a tornado. They offer no sensible resistance. The mere naturalist, the man devoted so exclusively to the study of nature as to believe in nothing but natural causes, is not able to understand the strength with which moral and religious convictions take hold of the minds of men. These convictions however, are the strongest, the most ennobling, and the most dangerous for any class of men to disregard or ignore.

In saying that the system is atheistic, it is not said that Mr. Darwin is an atheist. Nor is it meant that every one who adopts the theory does it in an atheistic sense...His theory is that hundreds or thousands of millions of years ago God called a living germ, or living germ, into existence, and that since that time God has no more to do with the universe than if He did not exist. This is atheism to all intents and purposes, because it leaves the soul as entirely without God, without a Father, Helper, or Ruler, as the doctrine of Epicurus or of Comte." Charles Hodge, Princeton Theologian, Systematic Theology, Wm. B. Eerdmans Publishing Co, 1975, vol. 2, p. 15

Galileo, the most profound philosopher of his age, when questioned by the Roman Inquisition as to his belief in the existence of God, replied, pointing to a straw on the floor of his dungeon, that from the structure of that object alone he would infer with certainty the existence of an intelligent Creator. —Walter Baxendale

You overlooked these quotes:

“For these reasons the Teaching Authority of the Church does not forbid that, in conformity with the present state of human sciences and sacred theology, research and discussions, on the part of men experienced in both fields, take place with regard to the doctrine of evolution, in as far as it inquires into the origin of the human body as coming from pre-existent and living matter - for the Catholic faith obliges us to hold that souls are immediately created by God.”

-- Pope Pius XII, 12 August 1950

“New findings lead us toward the recognition of evolution as more than a hypothesis. In fact it is remarkable that this theory has had progressively greater influence on the spirit of researchers, following a series of discoveries in different scholarly disciplines. The convergence in the results of these independent studies—which was neither planned nor sought—constitutes in itself a significant argument in favor of the theory.”

“A theory is a meta-scientific elaboration, which is distinct from, but in harmony with, the results of observation. With the help of such a theory a group of data and independent facts can be related to one another and interpreted in one comprehensive explanation. The theory proves its validity by the measure to which it can be verified. It is constantly being tested against the facts; when it can no longer explain these facts, it shows its limits and its lack of usefulness, and it must be revised.”

-- Pope John Paul II, 23 October 1996.