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At the heart of their criticisms were the portrayal of Al Qaeda as radical Islamists who believed their interpretation of their religion led them to kill civilians.

Right. Nothing in their holy books call for violence. /s

The Koran:

Sura (2:191-193) - "And slay them wherever ye find them, and drive them out of the places whence they drove you out, for persecution of Muslims is worse than slaughter of non-believers...and fight them until persecution is no more, and religion is for Allah."

Sura (4:74) - "Let those fight in the way of Allah who sell the life of this world for the other. Whoso fighteth in the way of Allah, be he slain or be he victorious, on him We shall bestow a vast reward."

Sura (4:76) - "Those who believe fight in the cause of Allah…"

Sura (5:33) - "The punishment of those who wage war against Allah and His messenger and strive to make mischief in the land is only this, that they should be murdered or crucified or their hands and their feet should be cut off on opposite sides or they should be imprisoned; this shall be as a disgrace for them in this world, and in the hereafter they shall have a grievous chastisement"

Sura (8:12) - "I will cast terror into the hearts of those who disbelieve. Therefore strike off their heads and strike off every fingertip of them"

Sura (8:39) - "And fight with them until there is no more persecution and religion should be only for Allah"

Sura (9:14) - "Fight them, Allah will punish them by your hands and bring them to disgrace..."

Sura (9:29) - "Fight those who believe not in Allah nor the Last Day, nor hold that forbidden which hath been forbidden by Allah and His Messenger, nor acknowledge the religion of Truth, even if they are of the People of the Book, until they pay the Jizya with willing submission, and feel themselves subdued."

Sura (9:123) - "O you who believe! Fight those of the unbelievers who are near to you and let them find in you hardness."

Sura (47:4) - "So when you meet in battle those who disbelieve, then smite the necks until when you have overcome them, then make them prisoners,"

Sura (61:4) - "Surely Allah loves those who fight in His way"

From the Hadith:

Muslim (1:33) - the Messenger of Allah said: I have been commanded to fight against people till they testify that there is no god but Allah, that Muhammad is the messenger of Allah

Bukhari (8:387) - Allah's Apostle said, “I have been ordered to fight the people till they say: 'None has the right to be worshipped but Allah’”

Tabari 7:97 The morning after the murder of Ashraf, the Prophet declared, "Kill any Jew who falls under your power."

Ibn Ishaq: 327 - “Allah said, ‘A prophet must slaughter before collecting captives. A slaughtered enemy is driven from the land. Muhammad, you craved the desires of this world, its goods and the ransom captives would bring. But Allah desires killing them to manifest the religion.’”

Ibn Ishaq: 992 - "Fight everyone in the way of Allah and kill those who disbelieve in Allah."