Psa 33:6 By the word of the LORD were the heavens made; and all the host of them by the breath of his mouth.
The universe was spoken into existence. It was not "organized" from pre-existing material. All the material necessary to make the universe was created by God, by the breath of his mouth.
Wai-ming, if you believe that there was anything that pre-existed God, then what was it and what proof do you have to support your position?
I have no problem with a God who works within natural laws rather than circumventing them. Did God create everything out of nothing? He probably could have if He had wanted to. But perhaps matter and energy have always existed, just as God has.
Ps 33:6 By the word of the LORD were the heavens made; and all the host of them by the breath of his mouth.
Great scripture. God decreed it, and so it was done. Nothing "ex nihilo" about that.
Wasn't it Julie Andrews who sang "Nothing comes from nothing. Nothing ever will..."?
In fact the only explicit Scriptural support for "from nothing" comes from Maccabees. (The passage you cite could more easily be read as support for the participation of the Son = Word, and Spirit = breath in the creation, than as a basis for creation ex nihilo.)