Ah, the crux of the problem. You seem to have a different copy of the Bill Of Rights than everyone else here. Our copy does not say "well regulated state Militia", it says "well regulated Militia" and then goes on to indicate how that's something good for a State, which does not in any way indicate that the State is the topmost controlling authority of the Militia being referred to.
So does mine. And, as I said, it refers to the state Militia.
"which does not in any way indicate that the State is the topmost controlling authority of the Militia being referred to."
Well, it's "well regulated". And its officers are appointed by the state. I give up -- what militia is the second amendment referring to?