Correct, I got that point wrong. But the principle still stands, and thus Marbury had no standing.
So, in a sense it is about standing, but I think it's better seen as a case about choice of venue. You can't have a murder case tried before a probate court - not that the state has no venue to try a murder case, just that a murder case is properly brought before a different court.
"Standing" is about the suitability of the plaintiff, not about the suitability of the court.