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Berkeley s Radical An Interview with Phillip E. Johnson
Touchstone Magazine ^ | June 2002 | Touchstone interview

Posted on 05/29/2002 8:32:25 AM PDT by cornelis

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To: tortoise
The first part of the problem is nailing down the definitions; people use terms like "consciousness" without really knowing what they mean.

Agreed.

501 posted on 06/03/2002 7:26:58 AM PDT by yendu bwam
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To: Diamond
Is the notion 'goofy' observable and testable?

Yes. Observable. This is an example of the reaction upon the explanation of Darwininian evolution.

Of course it is a picture of a Darwininian.

502 posted on 06/03/2002 7:28:14 AM PDT by AndrewC
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To: AndrewC
The article was a group of words assembled to end up with nothing.

Hmmmm. Let's have a look at a chunk of just the intro:

What is a transitional fossil?

The term "transitional fossil" is used at least two different ways on talk.origins, often leading to muddled and stalemated arguments. I call these two meanings the "general lineage" and the "species-to-species transition":

"General lineage":

This is a sequence of similar genera or families, linking an older group to a very different younger group. Each step in the sequence consists of some fossils that represent a certain genus or family, and the whole sequence often covers a span of tens of millions of years. A lineage like this shows obvious morphological intermediates for every major structural change, and the fossils occur roughly (but often not exactly) in the expected order. Usually there are still gaps between each of the groups -- few or none of the speciation events are preserved. Sometimes the individual specimens are not thought to be directly ancestral to the next-youngest fossils (i.e., they may be "cousins" or "uncles" rather than "parents"). However, they are assumed to be closely related to the actual ancestor, since they have intermediate morphology compared to the next-oldest and next-youngest "links". The major point of these general lineages is that animals with intermediate morphology existed at the appropriate times, and thus that the transitions from the proposed ancestors are fully plausible. General lineages are known for almost all modern groups of vertebrates, and make up the bulk of this FAQ.

"Species-to-species transition":

This is a set of numerous individual fossils that show a change between one species and another. It's a very fine-grained sequence documenting the actual speciation event, usually covering less than a million years. These species-to-species transitions are unmistakable when they are found. Throughout successive strata you see the population averages of teeth, feet, vertebrae, etc., changing from what is typical of the first species to what is typical of the next species. Sometimes, these sequences occur only in a limited geographic area (the place where the speciation actually occurred), with analyses from any other area showing an apparently "sudden" change. Other times, though, the transition can be seen over a very wide geological area. Many "species-to-species transitions" are known, mostly for marine invertebrates and recent mammals (both those groups tend to have good fossil records), though they are not as abundant as the general lineages (see below for why this is so). Part 2 lists numerous species-to-species transitions from the mammals.

Transitions to New Higher Taxa

As you'll see throughout this FAQ, both types of transitions often result in a new "higher taxon" (a new genus, family, order, etc.) from a species belonging to a different, older taxon. There is nothing magical about this. The first members of the new group are not bizarre, chimeric animals; they are simply a new, slightly different species, barely different from the parent species. Eventually they give rise to a more different species, which in turn gives rise to a still more different species, and so on, until the descendents are radically different from the original parent stock. For example, the Order Perissodactyla (horses, etc.) and the Order Cetacea (whales) can both be traced back to early Eocene animals that looked only marginally different from each other, and didn't look at all like horses or whales. (They looked rather like small, dumb foxes with raccoon-like feet and simple teeth.) But over the following tens of millions of years, the descendents of those animals became more and more different, and now we call them two different orders.

There are now several known cases of species-to-species transitions that resulted in the first members of new higher taxa. See part 2 for details.

Why do gaps exist? (or seem to exist)

Ideally, of course, we would like to know each lineage right down to the species level, and have detailed species-to-species transitions linking every species in the lineage. But in practice, we get an uneven mix of the two, with only a few species-to-species transitions, and occasionally long time breaks in the lineage. Many laypeople even have the (incorrect) impression that the situation is even worse, and that there are no known transitions at all. Why are there still gaps? And why do many people think that there are even more gaps than there really are?

Stratigraphic gaps

The first and most major reason for gaps is "stratigraphic discontinuities", meaning that fossil-bearing strata are not at all continuous. There are often large time breaks from one stratum to the next, and there are even some times for which no fossil strata have been found. For instance, the Aalenian (mid-Jurassic) has shown no known tetrapod fossils anywhere in the world, and other stratigraphic stages in the Carboniferous, Jurassic, and Cretaceous have produced only a few mangled tetrapods. Most other strata have produced at least one fossil from between 50% and 100% of the vertebrate families that we know had already arisen by then (Benton, 1989) -- so the vertebrate record at the family level is only about 75% complete, and much less complete at the genus or species level. (One study estimated that we may have fossils from as little as 3% of the species that existed in the Eocene!) This, obviously, is the major reason for a break in a general lineage. To further complicate the picture, certain types of animals tend not to get fossilized -- terrestrial animals, small animals, fragile animals, and forest-dwellers are worst. And finally, fossils from very early times just don't survive the passage of eons very well, what with all the folding, crushing, and melting that goes on. Due to these facts of life and death, there will always be some major breaks in the fossil record.

Species-to-species transitions are even harder to document. To demonstrate anything about how a species arose, whether it arose gradually or suddenly, you need exceptionally complete strata, with many dead animals buried under constant, rapid sedimentation. This is rare for terrestrial animals. Even the famous Clark's Fork (Wyoming) site, known for its fine Eocene mammal transitions, only has about one fossil per lineage about every 27,000 years. Luckily, this is enough to record most episodes of evolutionary change (provided that they occurred at Clark's Fork Basin and not somewhere else), though it misses the rapidest evolutionary bursts. In general, in order to document transitions between species, you specimens separated by only tens of thousands of years (e.g. every 20,000-80,000 years). If you have only one specimen for hundreds of thousands of years (e.g. every 500,000 years), you can usually determine the order of species, but not the transitions between species. If you have a specimen every million years, you can get the order of genera, but not which species were involved. And so on. These are rough estimates (from Gingerich, 1976, 1980) but should give an idea of the completeness required.

Note that fossils separated by more than about a hundred thousand years cannot show anything about how a species arose. Think about it: there could have been a smooth transition, or the species could have appeared suddenly, but either way, if there aren't enough fossils, we can't tell which way it happened.

Discovery of the fossils

The second reason for gaps is that most fossils undoubtedly have not been found. Only two continents, Europe and North America, have been adequately surveyed for fossil-bearing strata. As the other continents are slowly surveyed, many formerly mysterious gaps are being filled (e.g., the long-missing rodent/lagomorph ancestors were recently found in Asia). Of course, even in known strata, the fossils may not be uncovered unless a roadcut or quarry is built (this is how we got most of our North American Devonian fish fossils), and may not be collected unless some truly dedicated researcher spends a long, nasty chunk of time out in the sun, and an even longer time in the lab sorting and analyzing the fossils. Here's one description of the work involved in finding early mammal fossils: "To be a successful sorter demands a rare combination of attributes: acute observation allied with the anatomical knowledge to recognise the mammalian teeth, even if they are broken or abraded, has to be combined with the enthusiasm and intellectual drive to keep at the boring and soul-destroying task of examining tens of thousands of unwanted fish teeth to eventually pick out the rare mammalian tooth. On an average one mammalian tooth is found per 200 kg of bone-bed." (Kermack, 1984.)

Documenting a species-to-species transition is particularly grueling, as it requires collection and analysis of hundreds of specimens. Typically we must wait for some paleontologist to take it on the job of studying a certain taxon in a certain site in detail. Almost nobody did this sort of work before the mid-1970's, and even now only a small subset of researchers do it. For example, Phillip Gingerich was one of the first scientists to study species-species transitions, and it took him ten years to produce the first detailed studies of just two lineages (see part 2, primates and condylarths). In a (later) 1980 paper he said: "the detailed species level evolutionary patterns discussed here represent only six genera in an early Wasatchian fauna containing approximately 50 or more mammalian genera, most of which remain to be analyzed." [emphasis mine]

Getting the word out

There's a third, unexpected reason that transitions seem so little known. It's that even when they are found, they're not popularized. The only times a transitional fossil is noticed much is if it connects two noticably different groups (such as the "walking whale" fossil reported in 1993), or if illustrates something about the tempo and mode of evolution (such as Gingerich's work). Most transitional fossils are only mentioned in the primary literature, often buried in incredibly dense and tedious "skull & bones" papers utterly inaccessible to the general public. Later references to those papers usually collapse the known species-to-species sequences to the genus or family level. The two major college-level textbooks of vertebrate paleontology (Carroll 1988, and Colbert & Morales 1991) often don't even describe anything below the family level! And finally, many of the species-to-species transitions were described too recently to have made it into the books yet.

Why don't paleontologists bother to popularize the detailed lineages and species-to-species transitions? Because it is thought to be unnecessary detail. For instance, it takes an entire book to describe the horse fossils even partially (e.g. MacFadden's "Fossil Horses"), so most authors just collapse the horse sequence to a series of genera. Paleontologists clearly consider the occurrence of evolution to be a settled question, so obvious as to be beyond rational dispute, so, they think, why waste valuable textbook space on such tedious detail?

Misunderstanding of quotes about punctuated equilibrium

What paleontologists do get excited about are topics like the average rate of evolution. When exceptionally complete fossil sites are studied, usually a mix of patterns are seen: some species still seem to appear suddenly, while others clearly appear gradually. Once they arise, some species stay mostly the same, while others continue to change gradually. Paleontologists usually attribute these differences to a mix of slow evolution and rapid evolution (or "punctuated equilibrium": sudden bursts of evolution followed by stasis), in combination with the immigration of new species from the as-yet-undiscovered places where they first arose.

There's been a heated debate about which of these modes of evolution is most common, and this debate has been largely misquoted by laypeople, particularly creationists. Virtually all of the quotes of paleontologists saying things like "the gaps in the fossil record are real" are taken out of context from this ongoing debate about punctuated equilibrium. Actually, no paleontologist that I know of doubts that evolution has occurred, and most agree that at least sometimes it occurs gradually. The fossil evidence that contributed to that consensus is summarized in the rest of this FAQ. What they're arguing about is how often it occurs gradually. You can make up your own mind about that. (As a starting point, check out Gingerich, 1980, who found 24 gradual speciations and 14 sudden appearances in early Eocene mammals; MacFadden, 1985, who found 5 cases of gradual anagenesis, 5 cases of probable cladogenesis, and 6 sudden appearances in fossil horses; and the numerous papers in Chaline, 1983. Most studies that I've read find between 1/4-2/3 of the speciations occurring fairly gradually.)

Predictions of creationism and of evolution

Before launching into the transitional fossils, I'd like to run through the two of the major models of life's origins, biblical creationism and modern evolutionary theory, and see what they predict about the fossil record.

The Transitional Vertebrate Fossils FAQ.

Maybe it's just me, but I'm getting sentences, paragraphs, meaning above the individual word level here.

503 posted on 06/03/2002 7:42:57 AM PDT by VadeRetro
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To: VadeRetro
Maybe it's just me, but I'm getting sentences, paragraphs, meaning above the individual word level here.

It is just you. Your language affliction is worsening. Maybe you should read and attempt to discern meaning before making yourself look like...

Post 453 mentions post 373. Post 373 has this in it---P.S. I recommend to read this article on talk.origins.

And if you can read simple things you'll see I quoted the article in blue, as I normally do. Guess what article contains ---cultures evolve but they don't evolve in the way that species evolve.?

504 posted on 06/03/2002 8:06:20 AM PDT by AndrewC
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To: AndrewC
Indeed, you quoted a different article from the one phaedrus was feebly waving away. He had even less adequately addressed "Evolution and Altruism" earlier. My mistake. However, I believe you have the same problem in any case.

My close relatives have many genes in common with me. If I act on their behalf so that they live and breed my genes will be passed on even if I don't reproduce myself. The second type is called mutual benefit altruism - I'll scratch your back if you scratch mine. Both kinds of "altruism" have obvious benefits and it is not hard to see why they are selected for.

However there is a third kind which is rarer. Some animals (principally primates) live in social groups which act together and have complex social lives within the group. In these animals group cohesion is important and there is selection for actions which preserve the integrity of the group as a whole. . .

I still don't see where your criticism applies.

505 posted on 06/03/2002 8:28:33 AM PDT by VadeRetro
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To: AndrewC
From T.O.: Cultures evolve but they don't evolve in the way that species evolve.

Is this supposed to be meaningless? Does it depend upon your definition of "meaningless?"

506 posted on 06/03/2002 8:31:13 AM PDT by VadeRetro
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To: jennyp
One more question, or observation, if you will. If actual origins are not consequential while how we live our lives is very important, how or why are you so dedicated, committed, to your version or understanding of the origins story?
507 posted on 06/03/2002 8:32:31 AM PDT by Phaedrus
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To: VadeRetro
I still don't see where your criticism applies.

No surprise there.

The last statement of the article (which is what I cited)says it all.

508 posted on 06/03/2002 8:33:02 AM PDT by AndrewC
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To: AndrewC
The article was a group of words assembled to end up with nothing. -- AndrewC
509 posted on 06/03/2002 8:59:07 AM PDT by VadeRetro
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To: VadeRetro
The article was a group of words assembled to end up with nothing. -- AndrewC

I see we agree that the article was nothing. Thanks!

510 posted on 06/03/2002 9:22:56 AM PDT by AndrewC
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To: Phaedrus
One more question, or observation, if you will. If actual origins are not consequential while how we live our lives is very important, how or why are you so dedicated, committed, to your version or understanding of the origins story?

Because how we deal with Truth is important. One side of this debate spends all its time either frantically waving away the facts or waving away the logical, reasonable implications of the facts. Our side embraces the facts, and reason is our friend. Don't be afraid of facts and logic.

511 posted on 06/03/2002 9:47:56 AM PDT by jennyp
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To: Phaedrus
Now I find this interesting but I would like a little help with the word, "instantiation". When a hard drive is optimized, the designer (I am partial to this word) knows what optimization means and presumably sets parameters to achieve this result. As to living forms, I would not have a clue what optimization means in the context of 300,000 species.

The design parameter for a species is reproductive fitness, an important part of which is survival. The design selection process in nature takes care of itself, though the rather loose selection parameters permit quite a bit of divergence. As for "instantiation", it was my way of saying that biological evolution would be an implementation of a general mathematical pattern (mathematical patterns having little or no context on their own).

512 posted on 06/03/2002 10:44:07 AM PDT by tortoise
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To: jennyp
Good point. Sometimes it seems that those on the Creationist side are more intent on destroying scientific inquiry that on promoting religion. The same could be said for the Post-Modern-Deconstructionists (whose world view similar.)
513 posted on 06/03/2002 10:46:55 AM PDT by Doctor Stochastic
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To: yendu bwam
I am curious, when and how do you believe that consciousness will arise in machines?

How are we defining consciousness for the sake of this discussion?

514 posted on 06/03/2002 10:49:34 AM PDT by tortoise
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To: tortoise
You know more about this field than I. Pick a definition that you feel is reasonable.
515 posted on 06/03/2002 10:55:07 AM PDT by yendu bwam
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To: jennyp
Because how we deal with Truth is important.

And "truth" to you is evidently what you say it is.

516 posted on 06/03/2002 11:09:36 AM PDT by AndrewC
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To: tortoise
Would also be interested in how you might define 'free will.'
517 posted on 06/03/2002 11:16:50 AM PDT by yendu bwam
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To: beckett
Thanks beckett. That Whittaker Chambers quote is so beautiful! best, bb.
518 posted on 06/03/2002 11:36:58 AM PDT by betty boop
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To: PatrickHenry
Placemarker.
519 posted on 06/03/2002 11:43:52 AM PDT by PatrickHenry
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To: yendu bwam
Not sure what you mean by this. Quantum mechanical behavior happens all the time - everywhere (including in the brain). The question is whether quantum mechanical wave function interference effects affect thinking. I believe there are quite a lot of people who do not agree with the statement above.

The question isn't whether or not QM behavior is happening in the brain, it is whether or not meaningful coherent patterns in an information theoretic sense can be encoded in the QM substrate in an environment like the human brain. The argument is that even if QM effects are affecting the brain, it necessarily amounts to nothing more than noise due to environmental factors preventing any kind of persistent structure.

In a broader sense, the only thing we really know about the computational process of the human mind is that it is finite state machinery (this is something that can be measured and tested without knowing the mechanics of the machinery). This narrows the scope a lot, and even if there was QM machinery at work, then it must be a fairly simple finite state version of it. Note that this eliminates the necessity for QM behaviors as an explanation, as any FSM model that uses QM can necessarily be expressed as an ordinary boring FSM by definition. This is a much classier and more rigorous argument, but I don't bring it out much because it requires a little deeper understanding of the relevant points. In a nutshell, any QM behaviors that affect cognition must be FSM in nature based on measurable properties of the mind, which means that the human mind (in all its glory), must be expressable on any universal Turing machine (like ordinary silicon processors). Therefore, the QM argument is probably a moot point in any case, and at best would only affect the computational complexity of certain types of computations in implementation. It would not prevent the implementation of equivalent systems in ordinary silicon.

520 posted on 06/03/2002 11:44:31 AM PDT by tortoise
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