ChromoPainter/fineSTRUCTURE analysis of select South Asian/West Eurasian populations
February 22, 2012
http://dienekes.blogspot.com/2012/02/chromopainterfinestructure-analysis-of.html
This is the final result of the analysis mentioned in this previous post on the Kalash, using all 22 chromosomes.
Due to the quadratic running time of ChromoPainter, I took a random sample of 15 individuals from every included population with more than15 individuals. The final set included 392 individuals. It appears that a set of ~400 individuals/~260k SNPs can be processed in about 2 weeks on a single thread.
Kalash tribal girl (South Asia).