(Titus 1:4); “I appeal to you for my child, Onesimus,
whose father I have become in my imprisonment” (Philem. 10).
For I became your father in Christ Jesus through the gospel”
(1 Cor. 4:14–15).
“She who is at Babylon, who is likewise chosen,
sends you greetings; and so does my son Mark” (1 Pet. 5:13). (Peter is thus Marks spiritual Father)
None of the Scriptures you cited changed Christ's command... It was long after Peter when 'man' decided they were to be called 'holy father'... There will be a long line of souls on judgment day, getting to explain the claim Paul and Peter rescinded Christ's command.
That miracle while Christ was upon the Cross, gave access to Him, to any who would without the need of any flesh man. Matthew 27:50 Jesus, when he had cried again with a loud voice, yielded up the ghost. 51 And, behold, the veil of the temple was rent in twain from the top to the bottom; and the earth did quake, and the rocks rent;