I believe any individual or group of partners who owns a business would do well to draft a set of company bylaws that clearly defines the company as one that conducts business according to specific religious tenets. This will go a long way toward ensuring that there will be no question about the legal protections afforded to the company under the Hobby Lobby ruling.
The Hobby Lobby case was NOT decided on religious freedom grounds, but the court opened a huge door for future cases by recognizing the religious freedom of Hobby Lobby as a corporation.