But this pathogen doesn't have an adapting immune system. Its DNA has genuinely mutated, turning it into a resistant strain. That's evolution.
Uh, you might want to brush up on your science a little. Strains are not mutations. They coexist with other strains and become dominant when the other strains are killed off. That's pretty much the definition of "strain." If something had mutated they would be talking about mutated variations, not strains.