I KNOW these to be Church controlled:
CCHR - Cittizens Commission on Human Rights www.psychassault.org and others
CREO - Commity to Reinvolve Ex Offenders
Apple Schools
Narconon
FASE - Foundation for Advancements in Science and Education, makes videos for PBS and public schools
I don't KNOW if these are Church supported, but they have the Church 'look and feel':
A.S.P.I.R.E - The Alliance to STOP Psychiatry's Influence on Religion Education.
Psych Drug Truth - http://www.prozactruth.com/ - The word 'Psych' and the tag line "Slavery Of Mankind By Psychiatry Is NOT An Option." are dead give aways.
Probably a whole bunch more, but I don't have the time to dig them up right now...
Narconon definitely is. they are also allowed in schools in some states to preach, go figure