“...Pichardo has male sexual reproductive organs.”
He’s a guy.
No she doesn’t.
And never did.
It doesn't say that in this article.
If you got this from the AP story, you omitted these lines:
Later, after her family complained, two corrections nurses performed an exam and told supervisors that Pichardo was a female. Pichardo’s family [her three children] and her lawyer, Kubiliun, both said there is no way that the first nurse really examined her at the jail.
So you appear to be mistaken. She is a woman.