The ones you named are appointed positions and will be gone on January 20. Unless Hillary is elected and keeps a few of them.
As far as the “career” positions occupied by Muslims, I honestly do not know. I suspect nothing across the board will happen. Those pigs have already left the sty and will have to be handled in the same manner as a Baptist killer would be.
I sure that Trump would sic the FBI on those muzzie interlopers.