Free Republic
Browse · Search
General/Chat
Topics · Post Article

To: exDemMom
I love the field of bacteriology, but this kind of waiting on an indeterminate result pushed me into the world of computer science. The bugs are different, but more controllable. The waits for proteins to crystallize to allow structural analysis by x-ray crystallography spawned software modeling of protein folding. Computational biology is the synthesis of both disciplines.
72 posted on 03/02/2015 7:12:12 AM PST by Myrddin
[ Post Reply | Private Reply | To 71 | View Replies ]


To: Myrddin

I’m a biochemist, so have only grown a few species of bugs. I always call E. coli the workhorse of the lab, since they grow fairly quickly.

The software modelling comes in handy when you are dealing with proteins that are too unstable or cannot be expressed in high enough quantity to crystallize. Some proteins do not crystallize. Back in grad school, during one of our lessons on protein structure analysis, the professor told us how he would spend weeks entering the characteristics of a protein into a code, which he would then take to UCLA and, for $16,000/hr computation time (20 years ago), he could feed the code into a CRAY and get some modelling results. He had to be very careful about the programming; at that price, he did not want a buggy or incorrect code. For all that money, the output was a 3D line diagram of a protein vibrating between its possible conformations, lasting a few seconds.


73 posted on 03/03/2015 3:42:06 AM PST by exDemMom (Current visual of the hole the US continues to dig itself into: http://www.usdebtclock.org/)
[ Post Reply | Private Reply | To 72 | View Replies ]

Free Republic
Browse · Search
General/Chat
Topics · Post Article


FreeRepublic, LLC, PO BOX 9771, FRESNO, CA 93794
FreeRepublic.com is powered by software copyright 2000-2008 John Robinson