This is one of the current speculations. Because some sections of the genome have been shown to overlap, it may be that the "junk DNA" speculation is wrong, and a lot of this DNA codes for things not currently in use, or for structures that appear during development but disappear at birth, like lungs.
Surprisingly, g3 may have this correct. Don't go looking for proof though. It'll be decades before this gets sorted out, if then.