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Evolved DNA stitches itself up [Ever closer to "life-in-the-lab"]
Nature ^ | 31 March 2004 | Philip Ball

Posted on 04/06/2004 7:25:45 PM PDT by PatrickHenry

Could DNA have kick-started life on Earth instead of RNA?

Researchers have managed to create bits of DNA that can stitch themselves together without a helping hand from other molecules. By contrast, natural DNA needs enzymes to stitch itself up, correct mutations, or make copies of itself.

The creation of this super-capable DNA suggests that rare bits of natural DNA might have evolved the same capability in the past. That could alter our thinking about how life began.

Researchers have known for decades that RNA, the molecule that translates information in DNA into proteins, can show enzyme-like behaviour. These special forms of RNA, called ribozymes, won their discoverers a Nobel Prize in the 1980s. Since then, several ribozymes have been found in cells.

Ronald Breaker of Yale University and his colleagues have shown that the equivalent molecules for DNA, deoxyribozymes, can be created. "We have shown that RNA is not special in that regard," says Breaker.

Now they have gone one step further, devising deoxyribozymes that catalyze links between DNA molecules themselves, as they report in the Journal of the American Chemical Society1. Creation of these links is an essential part of the process by which DNA replicates itself.

If natural DNA could do that too, it might have been able to kick-start life on this planet.

Many researchers reckon that RNA, rather than DNA, formed the first building block of life, in part because it has this capacity to behave like an enzyme. There are many other pieces of evidence to indicate that life on our planet began with RNA, but it now seems that this molecule's priority may owe more to chance than to any special capabilities.

"If you play out the origin of life on a thousand different planets like Earth it may sometimes look very different," says Breaker, suggesting our world might begin with DNA rather than RNA.

Slow going

Breaker's team made the deoxyribozymes by artificially evolving natural DNA in a test-tube. Strands of DNA were shuffled at random. Those that showed enzyme-like activity were picked out and fine-tuned by repeating the shuffling process over and over. The researchers found they needed two kinds of deoxyribozyme to stitch DNA together.

So far the deoxyribozymes work 100,000 times slower than the natural enzyme, called DNA polymerase. But if this can be improved, then deoxyribozymes could benefit biotechnologists.

Jack Szostak of the Massachusetts General Hospital in Boston thinks this might be possible. "I would not be surprised if DNA can do anything RNA can do," he says.

Researchers are exploring the use of artificially evolved RNA molecules to make drugs and to detect other molecules such as toxins. RNA is useful because it does not need an enzyme to glue itself together. But there are some disadvantages: it has a tendency to fall apart in water, and in some ways it is harder to make than DNA.

Researchers would prefer to use DNA if they could, says Szostak, and deoxyribozymes might give them that chance.

Footnote 1: Sreedhara, A., Li, Y. & Breaker, R. R. . Journal of the American Chemical Society, 126, 3454 - 3460, doi:10.1021/ja039713i (2004) [Link in original article]


TOPICS: Culture/Society; Miscellaneous; Philosophy
KEYWORDS: creationism; crevolist; darwin; dna; evolution; rna
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Other recent threads on the topic of "life-in-the-lab":

Science on verge of new `Creation' .

Changing One Gene Launches New Fly Species.

Evolution Caught In The Act.

Enzymes stitch together non-natural DNA [Getting closer to lab-made life].

Evolving Artificial DNA [Closer to making "life- in-the-lab"].

1 posted on 04/06/2004 7:25:48 PM PDT by PatrickHenry
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To: VadeRetro; jennyp; Junior; longshadow; RadioAstronomer; Physicist; LogicWings; Doctor Stochastic; ..
PING. [This list is for the evolution side of evolution threads, and some other science topics like cosmology. Long-time list members get all pings, but can request evo-only status. New additions will be evo-only, but can request all pings. FReepmail me to be added or dropped. Specify all pings or you'll get evo-pings only.]
2 posted on 04/06/2004 7:26:58 PM PDT by PatrickHenry (Hic amor, haec patria est.)
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To: All
Rank Location Receipts Donors/Avg Freepers/Avg Monthlies
58 Switzerland 10.00
1
10.00


10.00
1

Thanks for donating to Free Republic!

Move your locale up the leaderboard!

3 posted on 04/06/2004 7:28:47 PM PDT by Support Free Republic (Hi Mom! Hi Dad!)
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To: PatrickHenry
This just proves Intelligent Design yada yada yada yada. Any experiment anybody doesn't like just proves Intelligent Design.

All experiments prove that people can design experiments. They also tend to have some primary function, as does this one.
4 posted on 04/06/2004 7:32:47 PM PDT by VadeRetro
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To: VadeRetro
Have you noticed that lately the creos have stopped saying: "Get back to me when you can create life in the lab!" They're beginning to sense -- although dimly -- that their most treasured, all-purpose dismissal of biological science is about to be taken away from them.
5 posted on 04/06/2004 7:38:36 PM PDT by PatrickHenry (Hic amor, haec patria est.)
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To: PatrickHenry
Breaker's team made the deoxyribozymes by artificially evolving natural DNA in a test-tube.

Doesn't quite measure up to creating life.

6 posted on 04/06/2004 8:09:13 PM PDT by DrewsDad
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To: PatrickHenry
Happy chicken elbows-->Gazundheit(platypus)!

Take that! Muwahahahah! This article is now rebutted.

7 posted on 04/06/2004 8:11:52 PM PDT by Shryke
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To: PatrickHenry
Thanks for the ping!
8 posted on 04/06/2004 8:21:32 PM PDT by Alamo-Girl (Glad to be a monthly contributor to Free Republic!)
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To: PatrickHenry
Researchers have managed to create...

Ok...so who's point are you making here?

9 posted on 04/06/2004 8:58:53 PM PDT by ImaGraftedBranch (Education starts in the home. Education stops in the public schools)
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To: ImaGraftedBranch
"uper-capable DNA suggests that rare bits of natural DNA might have evolved the same capability in the past. That could alter our thinking about how life began"

Another alteration...hmmm One tiny cell cannot be formed from nothing. The cell was designed. In fact, the whole world was designed. Just because you find out how something works, doesn't mean it evolved.
10 posted on 04/06/2004 9:09:42 PM PDT by Cowgirl
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To: PatrickHenry
INTREP -

Researchers have managed to create bits of DNA

How odd - evolution says it all happens by chance - the manipulations of "researchers" is not exactly an example of evolution.

11 posted on 04/06/2004 9:58:10 PM PDT by LiteKeeper
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To: LiteKeeper
Read the article. They did this by "selecting" promising DNA molecules and allowing them to replicate -- just like nature!
12 posted on 04/07/2004 3:26:21 AM PDT by Junior (Remember, you are unique, just like everyone else.)
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To: Junior; VadeRetro
And so it begins again, the old, hauntingly familiar creationist tapdance.

How many different ways will they find, in this thread, to avoid recognizing reality?

13 posted on 04/07/2004 4:16:55 AM PDT by PatrickHenry (Hic amor, haec patria est.)
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To: All
A few getting up-to-speed links for those who may be new to the evolution threads:

Understanding Evolution, an evolution website for teachers.
15 Answers to Creationist Nonsense. From Scientific American
Index to Creationist Claims. From Talk.Origins. Exhaustive list.
Frequently Encountered Criticisms in Evolution vs. Creationism.
Arguments we think creationists should NOT use from Answers in Genesis.

14 posted on 04/07/2004 6:59:17 AM PDT by PatrickHenry (Hic amor, haec patria est.)
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To: Junior
Any human intervention negates the claim to evolution. Sorry
15 posted on 04/07/2004 7:04:53 AM PDT by LiteKeeper
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To: PatrickHenry
Your prediction seem to deserve at least the Golden Finch Award.
16 posted on 04/07/2004 7:06:55 AM PDT by Doctor Stochastic (Vegetabilisch = chaotisch is der Charakter der Modernen. - Friedrich Schlegel)
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To: Doctor Stochastic
Same old same old. Sigh
17 posted on 04/07/2004 7:45:16 AM PDT by furball4paws (Never less alone than when wholely alone; never less idle than when wholely idle.)
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To: furball4paws
If it's not in the laboratory, they claim that it isn't "reproducible" etc. If it is, they claim that it isn't "natural" etc. Being a Creationist means never having to say you're observant.
18 posted on 04/07/2004 7:53:18 AM PDT by Doctor Stochastic (Vegetabilisch = chaotisch is der Charakter der Modernen. - Friedrich Schlegel)
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To: Doctor Stochastic
A handy list of 24 creationist denial-responses from one of the prior threads in this "life-in-the-lab" series: Post 110.
19 posted on 04/07/2004 7:54:34 AM PDT by PatrickHenry (Hic amor, haec patria est.)
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To: LiteKeeper
Any human intervention negates the claim to evolution. Sorry

Not really. All these experiments do is speed up the process. We can't wait around for hundreds of millions of years while the process occurs naturally, so we have to speed it up in the lab.

20 posted on 04/07/2004 8:00:05 AM PDT by Modernman (Work is the curse of the drinking classes. -Oscar Wilde)
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