You seem to have missed the part about how the document "focuses on protection of religions themselves, particularly Islam, rather than the rights of individuals.."
See, it's "screw the religious, we're protecting religions."
So it's actually worse than you perceived. There's NO protection of religious individuals involved, here, just a generalized platform for prosecuting acts directed against "religion", Islam in particular.
BTW: "The Antichrist" and "The 12th Imam" will turn out to be the same dude. Mark my words.