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Researchers Trace Evolution to Relatively Simple Genetic Changes
Howard Hughes Medical Institute ^ | 25 Narcg 2005 | Staff

Posted on 05/31/2005 12:03:06 PM PDT by PatrickHenry

In a stunning example of evolution at work, scientists have now found that changes in a single gene can produce major changes in the skeletal armor of fish living in the wild.

The surprising results, announced in the March 25, 2005, issue of journal Science, bring new data to long-standing debates about how evolution occurs in natural habitats.

“Our motivation is to try to understand how new animal types evolve in nature,” said molecular geneticist David M. Kingsley, a Howard Hughes Medical Institute investigator at the Stanford University School of Medicine. “People have been interested in whether a few genes are involved, or whether changes in many different genes are required to produce major changes in wild populations.”

The answer, based on new research, is that evolution can occur quickly, with just a few genes changing slightly, allowing newcomers to adapt and populate new and different environments.

In collaboration with zoologist Dolph Schluter, at the University of British Columbia, Vancouver, Canada, and Rick Myers and colleagues at Stanford, Kingsley and graduate student Pamela F. Colosimo focused on a well-studied little fish called the stickleback. The fish — with three bony spines poking up from their backs — live both in the seas and in coastal fresh water habitats all around the northern hemisphere.


Wild populations of stickleback fish have evolved major changes in bony armor styles (shaded) in marine and freshwater environments. New research shows that this evolutionary shift occurs over and over again by increasing the frequency of a rare genetic variant in a single gene.

Sticklebacks are enormously varied, so much so that in the 19th century naturalists had counted about 50 different species. But since then, biologists have realized most populations are recent descendants of marine sticklebacks. Marine fish colonized new freshwater lakes and streams when the last ice age ended 10,000 to 15,000 years ago. Then they evolved along separate paths, each adapting to the unique environments created by large scale climate change.

“There are really dramatic morphological and physiological adaptations” to the new environments, Kingsley said.

For example, “sticklebacks vary in size and color, reproductive behavior, in skeletal morphology, in jaws and teeth, in the ability to tolerate salt and different temperatures at different latitudes,” he said.

Kingsley, Schluter and their co-workers picked one trait — the fish's armor plating — on which to focus intense research, using the armor as a marker to see how evolution occurred. Sticklebacks that still live in the oceans are virtually covered, from head to tail, with bony plates that offer protection. In contrast, some freshwater sticklebacks have evolved to have almost no body armor.

“It's rather like a military decision, to be either heavily armored and slow, or to be lightly armored and fast,” Kingsley said. “Now, in countless lakes and streams around the world these low-armored types have evolved over and over again. It's one of the oldest and most characteristic differences between stickleback forms. It's a dramatic change: a row of 35 armor plates turning into a small handful of plates - or even no plates at all.”

Using genetic crosses between armored and unarmored fish from wild populations, the research team found that one gene is what makes the difference.

“Now, for the first time, we've been able to identify the actual gene that is controlling this trait,” the armor-plating on the stickleback, Kingsley said

The gene they identified is called Eda, originally named after a human genetic disorder associated with the ectodysplasin pathway, an important part of the embryonic development process. The human disorder, one of the earliest ones studied, is called ectodermal dysplasia.

“It's a famous old syndrome,” Kingsley said. “Charles Darwin talked about it. It's a simple Mendelian trait that controls formation of hair, teeth and sweat glands. Darwin talked about `the toothless men of Sind,' a pedigree (in India) that was striking because many of the men were missing their hair, had very few teeth, and couldn't sweat in hot weather. It's a very unusual constellation of symptoms, and is passed as a unit through families.”

Research had already shown that the Eda gene makes a protein, a signaling molecule called ectodermal dysplasin. This molecule is expressed in ectodermal tissue during development and instructs certain cells to form teeth, hair and sweat glands. It also seems to control the shape of - bones in the forehead and nose.

Now, Kingsley said, “it turns out that armor plate patterns in the fish are controlled by the same gene that creates this clinical disease in humans. And this finding is related to the old argument whether Nature can use the same genes and create other traits in other animals.”

Ordinarily, “you wouldn't look at that gene and say it's an obvious candidate for dramatically changing skeletal structures in wild animals that end up completely viable and healthy,' he said. "Eda gene mutations cause a disease in humans, but not in the fish. So this is the first time mutations have been found in this gene that are not associated with a clinical syndrome. Instead, they cause evolution of a new phenotype in natural populations.”

The research with the wild fish also shows that the same gene is used whenever the low armor trait evolves. “We used sequencing studies to compare the molecular basis of this trait across the northern hemisphere,” said Kingsley. “It doesn't matter where we look, on the Pacific coast, the East coast, in Iceland, everywhere. When these fish evolve this low-armored state they are using the same genetic mechanism. It's happening over and over again. It makes them more fit in all these different locations.”

Because this trait evolves so rapidly after ocean fish colonize new environments, he added, “we wondered whether the genetic variant (the mutant gene) that controls this trait might still exist in the ocean fish. So we collected large numbers of ocean fish with complete armor, and we found a very low level of this genetic variant in the marine population.”

So, he said, “the marine fish actually carry the genes for this alternative state, but at such a low level it is never seen;” all the ocean fish remain well-armored. “But they do have this silent gene that allows this alternative form to emerge if the fish colonize a new freshwater location.”

Also, comparing what happens to the ectodysplasin signaling molecule when its gene is mutated in humans, and in fish, shows a major difference. The human protein suffers "a huge amount of molecular lesions, including deletions, mutations, many types of lesions that would inactivate the protein," Kingsley said.

But in contrast, “in the fish we don't see any mutations that would clearly destroy the protein.” There are some very minor changes in many populations, but these changes do not affect key parts of the molecule. In addition, one population in Japan used the same gene to evolve low armor, but has no changes at all in the protein coding region. Instead, Kingsley said, “the mutations that we have found are, we think, in the (gene's) control regions, which turns the gene on and off on cue.” So it seems that evolution of the fish is based on how the Eda gene is used; how, when and where it is activated during embryonic growth.

Also, to be sure they're working with the correct gene, the research team used genetic engineering techniques to insert the armor-controlling gene into fish “that are normally missing their armor plates. And that puts the plates back on the sides of the fish,” Kingsley said.

“So, this is one of the first cases in vertebrates where it's been possible to track down the genetic mechanism that controls a dramatic change in skeletal pattern, a change that occurs naturally in the wild,” he noted.

“And it turns out that the mechanisms are surprisingly simple. Instead of killing the protein (with mutations), you merely adjust the way it is normally regulated. That allows you to make a major change in a particular body region - and produces a new type of body armor without otherwise harming the fish.”


TOPICS: Culture/Society; Miscellaneous; Philosophy
KEYWORDS: crevolist; evolution; genetics; godsgravesglyphs; helixmakemineadouble; massextinction; ordovician; phenryjerkalert; trilobite; trilobites
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To: furball4paws
And so you would jam your religion down their throats, because you are the majority?

It would seem to me that in this day and age, the evolutionists are in the majority in the academy and in the media...and are the ones 'jamming their religion down our throats'.

Next time the Taliban come recruiting, I'll send them your way.

You're on their recruitment list?

161 posted on 05/31/2005 4:03:23 PM PDT by EternalVigilance ("We, the people, are the rightful masters of both Congress and the courts..." -Abraham Lincoln)
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To: PatrickHenry

Very interesting article. Thanks.


162 posted on 05/31/2005 4:07:54 PM PDT by ValenB4 ("Every system is perfectly designed to get the results it gets." - Isaac Asimov)
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To: fish hawk

Microevolution X 3.5 billion years = Macroevolution.


163 posted on 05/31/2005 4:23:46 PM PDT by mysterio
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To: EternalVigilance
The dust you've thrown into the air doesn't obscure the fact in the least that the Judeo-Christian God of the Bible, the God of Abraham, Isaac and Jacob, is and always has been the God of most Americans.

Since 1700 or so. Certainly not before.

164 posted on 05/31/2005 4:30:41 PM PDT by Right Wing Professor
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To: EternalVigilance
And like all man-centered 'isms', it is destructive in more ways than you are ready to face.

You mean like "capitalism"?

165 posted on 05/31/2005 4:30:52 PM PDT by jennyp (WHAT I'M READING: The Pentagon's New Map by Barnett)
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To: jennyp

If capital is your god, yes.


166 posted on 05/31/2005 4:32:08 PM PDT by EternalVigilance ("We, the people, are the rightful masters of both Congress and the courts..." -Abraham Lincoln)
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To: EternalVigilance
It would seem to me that in this day and age, the evolutionists are in the majority in the academy and in the media...and are the ones 'jamming their religion down our throats'.

We're also jamming math, physics, and English down your thoat. Most people who stayed in school call it 'education' though. And it's no more a religion than the theory of universal gravitation is a religion.

167 posted on 05/31/2005 4:32:46 PM PDT by Right Wing Professor
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To: VadeRetro
I'm not the one claiming crocks and alligators were the perfect "originals" not requiring further evolution.

And BTW. I am very familiar with many "might have" and "may have" models that have been so courteously passed on to me by the most devout Darwinists on these many threads.
168 posted on 05/31/2005 4:33:16 PM PDT by darbymcgill
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To: mysterio
Microevolution X 3.5 billion years = Macroevolution.

Wrong, monkey boy! Every 1,000 generations, the angels hit the reset button.
</severely retarded Jack Chick mode>

169 posted on 05/31/2005 4:33:24 PM PDT by PatrickHenry (Felix, qui potuit rerum cognoscere causas. The List-O-Links is at my homepage.)
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To: blueblazes
A shark is a shark is a shark. Those are not different species.

Interesting taxonomical ideas you have there. Great white sharks, whale sharks, and all other sharks belong to the same species? You should publish your ideas and revolutionize biological classification.
170 posted on 05/31/2005 4:34:44 PM PDT by aNYCguy
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To: Right Wing Professor
We're also jamming math, physics, and English down your thoat. Most people who stayed in school call it 'education' though.

Free people are quite capable of learning these things quite apart from you. Your post is an interesting exhibition of the elitist hubris of the educational 'elite'.

And it's no more a religion than the theory of universal gravitation is a religion.

Evolution is the core tenet of modern humanist dogma. Who do you think you're foolin'?

171 posted on 05/31/2005 4:37:55 PM PDT by EternalVigilance ("We, the people, are the rightful masters of both Congress and the courts..." -Abraham Lincoln)
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To: VadeRetro
"and the goo said, 'let there be alligators' and alligators were puked out of the goo, and the goo said, 'good, now on to the not-so-good originals that evolve over billions of years into humans' and the goo puked out a self-replicating amoeba sans flagella...."

Your argument is creationism with a god named "Goo."

He shoots, he scores!
172 posted on 05/31/2005 4:39:09 PM PDT by aNYCguy
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To: PatrickHenry
Great link, PH.

It's evolution from one species to another, leading to a large and obvious change in appearance. That used to be 'macroevolution', before the fundies decided they better move the goalposts. Nowadays unless you see a red-leaf lettuce transform into a wide-screen, hi-def TV before your very eyes, it isn't macroevolution, because macroevolution doesn't happen, this I know, for the Bible tells me so.

173 posted on 05/31/2005 4:45:15 PM PDT by Right Wing Professor
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To: EternalVigilance
Evolution is the core tenet of modern humanist dogma. Who do you think you're foolin'?

No, Gravity is the core tenet of modern humanist dogma, as it suggests that natural forces hold us to the Earth. This religion declares that there is no need for God to hold each and every one of us to the ground and keep us from flying off into space! Who do these physicists think they're fooling, saying Gravity isn't a religion?

Teach the controversy!
174 posted on 05/31/2005 4:46:02 PM PDT by aNYCguy
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To: aNYCguy

You're babbling.


175 posted on 05/31/2005 4:47:47 PM PDT by EternalVigilance ("We, the people, are the rightful masters of both Congress and the courts..." -Abraham Lincoln)
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To: EternalVigilance
And like all man-centered 'isms', it is destructive in more ways than you are ready to face.

You mean like "capitalism"?

If capital is your god, yes.

I must be slow today. Webster's says "ism" is "a distinctive doctrine, cause, or theory". You say that every man-made "ism" is destructive. Has Copernicanism (a.k.a. heliocentrism) been destructive? (This guy thinks it is, actually.)

OK, so you're saying that we take evolution to be a religion. Your previous sentence to Dimensio didn't register with me the first time:

This theory of yours has been atheisms primary vehicle for over a century. And like all man-centered 'isms', it is destructive in more ways than you are ready to face.
I can't speak for Richard Dawkins, but it's been pointed out here many times that evolution only really contradicts a literal interpretation of Genesis. Many religious people on FR have assured your side that they have no problem with evolution destroying their God. (For my part I've mentioned here before that my atheism never had anything to do with my accepting evolution, & still doesn't.) Do you think we're all lying?

Related question: Do you really think that knowledgable people who accept evolution really believe that we have some kind of moral obligation to evolve, in the same way that someone who believes in gravity feels a moral obligation to jump off a cliff?

176 posted on 05/31/2005 4:48:28 PM PDT by jennyp (WHAT I'M READING: The Pentagon's New Map by Barnett)
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To: EternalVigilance
Free people are quite capable of learning these things quite apart from you

So few creationists show any evidence of independent learning.

Your post is an interesting exhibition of the elitist hubris of the educational 'elite'.

Elites are often elitist.

Evolution is the core tenet of modern humanist dogma. Who do you think you're foolin'?

Ballocks. Evolution is a theory of biology. If you knew any biology, you'd know that.

177 posted on 05/31/2005 4:48:59 PM PDT by Right Wing Professor
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To: darbymcgill
I'm not the one claiming crocks and alligators were the perfect "originals" not requiring further evolution.

They aren't originals. Now reptiles, their far-back ancestors were amphibians, whose far-back ancestors were fish, whose far-back ancestors were simple chordates, whose far-back ancestors were some kind of generalized multicellulars, whose far-back ancestors were single-celled life. We can see back to a time when there were no crocodiles.

At a certain point, they evolved a fine adaptation to their niche. Then, since their niche didn't change too much or disappear on them, they stayed the same too, mostly. Selection pressures can be conservative (punishing deviations from the existing norm) or radical (encouraging certain particular deviations as improvements). It depends on what is going on in the quest to live, feed, and reproduce. If what worked for your granddaddy still works fine now, the pressures will probably be to not rock the boat.

Dragonflies go back even further. Cyanobacteria go back further yet, although the earliest claim (3.8 billion years ago) is no longer widely accepted. Being a crocodile, a shark, a dragonfly, or a cyanobacterium has never really stopped being a workable strategy.

But there's a lot of change visible in the geologic column. Continents drift. Asteroids hit. Ice ages follow hothouse conditions. Since crocodilians appeared, there's always somewhere been a swamp where it works to be a crocodile. Nevertheless, much of the life on Earth has repeatedly run into the change-or-die scenario over the same period.

178 posted on 05/31/2005 4:49:44 PM PDT by VadeRetro ( Liberalism is a cancer on society. Creationism is a cancer on conservatism.)
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To: aNYCguy
Your argument is creationism with a god named "Goo."

He shoots, he scores!


I find it enlightening that there are those so entrenched in their own dogma, they fail to recognize hyperbole when they see it.
179 posted on 05/31/2005 4:56:30 PM PDT by darbymcgill
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To: Right Wing Professor
Great link

Now added to The List-O-Links.

180 posted on 05/31/2005 4:58:01 PM PDT by PatrickHenry (Felix, qui potuit rerum cognoscere causas. The List-O-Links is at my homepage.)
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